base_breaks()
Custom ggplto2 break function (exponent)
hmp1_2_metadata
Public metadata of HMP1-II study Provides sample information and body sites Can be loaded to workspace via data(hmp1_2_metadata)
hmp1_2_metaphlan
Metaphlan2 HMP1-II Can be loaded to workspace via data(hmp1_2_metaphlan)
humann2Barplot()
humann2Barplot
humann2_table
HUMANn2 output of Cas gene abundnace amoung HMP1-II samples Can be loaded to workspace via data(humann2_table)
makeHumann2Barplot()
makeHumann2Barplot
orderHumannBySimilarity()
orderHumannBySimilarity
plotHummanMetadata()
plotHummanMetadata
pseudoLog10()
Signed Pseudo Logarithm
pseudolog_trans()
Custom pseudolog transformation
shortenTaxons()
shortenTaxon
themePM()
Custom ggplto2 theme